Scanprosite software

On taxonomy: any taxonomical term e. Homo sapiens , e. Fungi; Arthropoda or corresponding TaxID e. PS and P-x 2 -G-E-S-G 2 -[AS] » More » Options [ help ] Profile option Run the scan at a high sensitivity show weak matches for profiles Pattern options Number of X characters in a scanned sequence that can be matched by a conserved position in a pattern: Match mode : greedy, overlaps, no includes greedy, overlaps, includes greedy, no overlaps not greedy, overlaps, no includes not greedy, overlaps, includes not greedy, no overlaps.

Retrieve complete sequences : If you choose this option, not all output formats are available. Receive your results by email Email : Note that not all output formats are available for results returned by email. Job title : If available, the job title will be included in the subject of the results email.

Genomics , Transcriptomics. Web-based, cooperative portal for single-cell data analyses. Protein-protein interaction networks and enrichment analysis. Match a glycan substructure to a database of full structures. Genomics , Transcriptomics Systems Biology.

Fact sheets about viruses; linked to sequence databases. Genomics Evolution biology. N-terminal myristoylation of proteins by neural networks.

Genomics Systems Biology. Personalized Information Retrieval in biomedical literature. Evolution biology , Population genetics. Profile produced by amino acids scales on protein sequences.

Open source Java class library to process MS fragmentation. Combinations of motifs can also be used. Filters On taxonomy. Any taxonomical term e. Number of X characters in a scanned sequence that can be matched by a conserved position in a pattern. Only relevant if 'sig' is defined and is a pattern. If on defined, non empty, non zero : excludes motifs with a high probability of occurrence.

Default: on. Only works if 'seq' is defined and 'sig' is not defined, i. Mimimal number of hits per matched sequences.